Machine learning applied to global scale species distribution models (SDMs).
Fuster-Alonso, A., Mestre-Tomás, J., Baez, J. C., Pennino, M. G., Barber, X., Bellido, J. M., … & Coll, M.
Publications
2024
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Pardo-Palacios, Francisco J.; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Sílvia; Williams, Brian; Loveland, Jane E.; María, Maite De; Adams, Matthew S.; Balderrama-Gutierrez, Gabriela; Behera, Amit K.; Martinez, Jose M. Gonzalez; Hunt, Toby; Lagarde, Julien; Liang, Cindy E.; Li, Haoran; Meade, Marcus Jerryd; Amador, David A. Moraga; Prjibelski, Andrey D.; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M.; Çelik, Muhammed Hasan; Chen, Ying; Du, Mei R. M.; Felton, Colette; Göke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E.; Sim, Andre D.; Tang, Alison D.; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y.; Yang, Chen; Barnes, If; Berry, Andrew E.; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M.; Ferrández-Peral, Luis; Garcia-Reyero, Natàlia; Götz, Stefan; Hernández-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomás, Jorge; Mudge, Jonathan M.; Panayotova, Nedka G.; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A.; Carninci, Piero; Denslow, Nancy D.; Guigó, Roderic; Hunter, Margaret E.; Maehr, Rene; Shen, Yin; Tilgner, Hagen U.; Wold, Barbara J.; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M.; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N.
SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms
Pardo-Palacios, Francisco J.; Arzalluz-Luque, Angeles; Kondratova, Liudmyla; Salguero, Pedro; Mestre-Tomás, Jorge; Amorín, Rocío; Estevan-Morió, Eva; Liu, Tianyuan; Nanni, Adalena; McIntyre, Lauren; Tseng, Elizabeth; Conesa, Ana
2023
SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark
Mestre-Tomás, J., Liu, T., Pardo-Palacios, F., & Conesa, A.
